Journal_Club | ShareFAIR

Journal Club (JC#13)

Wed, 09 Sep 2026 13:00:00 +0000

Overview

Speaker : Jaffar GURA (LAMSADE)

Talk : “From Execution Traces to Queryable Provenance in Nextflow Workflows”

Journal Club (JC#12)

Wed, 11 Mar 2026 13:00:00 +0000

Overview

Speaker : Marie SCHMIT (Institut Pasteur)

Goal : Give some feedbacks and results about Young Researchers Days organized in Nantes to bring together the work of ShareFAIR’s young researchers.

Journal Club (JC#11)

Wed, 28 Jan 2026 13:00:00 +0000

Overview

Speaker : Alberto Marifoglia (University of Bologna)

Article : “Clinical Data Goes MEDS? Let’s OWL make sense of it](https://arxiv.org/abs/2601.04164)", Alberto Marfoglia, Jong Ho Jhee, Adrien Coulet. SWAT4HCLS 2026 conference.

Journal Club (JC#10)

Wed, 03 Dec 2025 13:00:00 +0000

Overview

Speaker : Camille Maumet(IRISA)

Article : “CODE beyond FAIR: a roadmap for reusable research software”, Roberto Di Cosmo, Sabrina Granger, Konrad Hinsen, Nicolas Jullien, Daniel Le Berre, Violaine Louvet, Camille Maumet, Clémentine Maurice, Raphaël Monat, Nicolas P. Rougier. Scientific Data volume 13.

Journal Club (JC#9)

Wed, 10 Sep 2025 13:00:00 +0000

Overview

Speaker : Romain Michelucci (INRIA)

Article : Predicting clinical pathways of traumatic brain injuries (TBIs). Eili, M.Y., Rezaeenour, J. & Roozbahani, M.H. Process mining. npj Digit. Med. 8, 112 (2025).

Journal Club (JC#8)

Thu, 10 Jul 2025 13:00:00 +0000

Overview

Speaker : Clémence Sebe (Université Paris-Saclay)

Article : Extracting Information in a Low-Resource Setting - Case Study on Bioinformatics Workflows](https://arxiv.org/abs/2411.19295]). Clémence Sebe, Sarah Cohen-Boulakia, Olivier Ferret, Aurélie Névéol. IDA (Advances in Intelligent Data Analysis). 2025.

Journal Club (JC#7)

Wed, 07 May 2025 13:00:00 +0000

Overview

Speaker : Mouna El Garb (UCBL 1)

Article : “SPARQL Rewritingù - Towards Desired Results” (Xun Jian et al.)

Journal Club (JC#6)

Wed, 12 Mar 2025 13:00:00 +0000

Overview

Speaker : Ulysse Le Clanche (IRISA)

Articles :

Journal Club (JC#5)

Wed, 20 Nov 2024 13:00:00 +0000

Overview

Speaker : Marie Schmit (Institut Pasteur)

Article : Recording provenance of workflow runs with RO-Crate" (Simone Leo et al.)

Journal Club (JC#4)

Wed, 11 Sep 2024 13:00:00 +0000

Overview

Speaker : Noémie Bossut (LAMSADE)

Article : Chapman A. et al.: Supporting Better Insights of Data Science Pipelines with Fine-grained Provenance.

Link : https://arxiv.org/pdf/2310.18079

Journal Club (JC#3)

Thu, 04 Jul 2024 13:00:00 +0000

Overview

Speaker : Melvin Atay (INRIA Rennes)

Article : Botvinik-Nezer R, Holzmeister F, Camerer CF, Dreber A, Huber J, Johannesson M, Kirchler M, Iwanir R, Mumford JA, Adcock RA, Avesani P. Variability in the analysis of a single neuroimaging dataset by many teams. Nature. 2020 Jun 4;582(7810):84-8.

Link : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7771346/pdf/nihms-1649206.pdf

Journal Club (JC#2)

Wed, 22 May 2024 13:00:00 +0000

Overview

Speaker : Clémence Sebe (Université Paris-Saclay)

Article : Ahmed Halioui, Petko Valtchev, Abdoulaye Banire Diallo: Bioinformatic Workflow Extraction from Scientific Texts based on Word Sense Disambiguation IEEE/ACM Trans Comput Biol Bioinform. 2018 Jun 14. doi: 10.1109/TCBB.2018.2847336.

Link : https://partage.liris.cnrs.fr/index.php/s/8DfNaAHHTNz9cNA

Journal Club (JC#1)

Wed, 03 Apr 2024 13:00:00 +0000

Overview

Speaker : George Marchment

Article : Patrick D. Schloss, Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research in mBio 9:10.1128/mbio.00525-18.

Link : https://partage.liris.cnrs.fr/index.php/s/odgk3oiPjo2CpM7